i-PI: A Python interface for ab initio path integral molecular dynamics simulations
نویسندگان
چکیده
Recent developments in path integral methodology have significantly reduced the computational expense of including quantum mechanical effects in the nuclear motion in ab initio molecular dynamics simulations. However, the implementation of these developments requires a considerable programming effort, which has hindered their adoption. Here we describe i-PI, an interface written in Python that has been designed to minimise the effort required to bring state-of-the-art path integral techniques to an electronic structure program. While it is best suited to first principles calculations and path integral molecular dynamics, i-PI can also be used to perform classical molecular dynamics simulations, and can just as easily be interfaced with an empirical forcefield code. To give just one example of the many potential applications of the interface, we use it in conjunction with the CP2K electronic structure package to showcase the importance of nuclear quantum effects in high pressure water.
منابع مشابه
Ab initio molecular dynamics with nuclear quantum effects at classical cost: Ring polymer contraction for density functional theory.
Path integral molecular dynamics simulations, combined with an ab initio evaluation of interactions using electronic structure theory, incorporate the quantum mechanical nature of both the electrons and nuclei, which are essential to accurately describe systems containing light nuclei. However, path integral simulations have traditionally required a computational cost around two orders of magni...
متن کاملQuantum effects in liquid water: Path-integral simulations of a flexible and polarizable ab initio model
We examine quantum effects in liquid water at ambient conditions by performing path-integral molecular dynamics simulations of a flexible, polarizable water model that was parameterized from ab initio calculations. The quantum liquid is less structured and has a smaller binding energy, in accord with previous simulations. The difference between the quantum and classical liquid binding energies ...
متن کاملAb Initio Molecular Dynamics Simulations of Furfural at the Liquid-Solid Interface
The bonding configuration and the heat of adsorption of a furfural molecule on the Pd(111) surface were determined by ab initio density-functional-theory calculations. The dynamics of pure liquid water, the liquid-solid interface formed by liquid water and the Pd(111) surface, as well as furfural at the water-Pd interface, were investigated by ab initio molecular dynamics simulations at finite ...
متن کاملAccelerated path-integral simulations using ring-polymer interpolation.
Imaginary-time path-integral (PI) molecular simulations can be used to calculate exact quantum statistical mechanical properties for complex systems containing many interacting atoms and molecules. The limiting computational factor in a PI simulation is typically the evaluation of the potential energy surface (PES) and forces at each ring-polymer "bead"; for an n-bead ring-polymer, a PI simulat...
متن کاملListe De Publications De Rodolphe Vuilleumier 1. Articles Dans Des Journauxà Comités De Lecture
Theoretical study of the ionization of liquid water from its several initial orbitals by fast electron impact acceptéà Journal of Physics B : Atomic, Molecular and Optical Physics. Equilibrium magnesium isotope fractionation between aqueous Mg2+ and carbonate minerals : Insights from path integral molecular dynamics. In press at Geochimica et Cosmochimica Acta. A NMR and molecular dynamics stud...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
عنوان ژورنال:
- Computer Physics Communications
دوره 185 شماره
صفحات -
تاریخ انتشار 2014